Changes in version 2.1.0.9000                      

                 Changes in version 2.1.0 (2024-04-27)                  

Major changes

  - Updated hsa KEGG pathways gene set objects kegg_genes and
    kegg_descriptions
  - Updated mmu KEGG pathways gene set objects mmu_kegg_genes and
    mmu_kegg_descriptions
  - Updated Reactome gene set objects reactome_genes and
    reactome_descriptions
  - Updated BioCarta gene set objects biocarta_genes and
    biocarta_descriptions
  - Updated GO gene set objects go_all_genes and GO_all_terms_df
  - Updated the BioGRID PIN adjacency list biogrid_adj_list
  - Updated the KEGG adjacency list kegg_adj_list
  - Updated the STRING adjacency lists mmu_string_adj_list and
    string_adj_list
  - Updated the example data: example_custom_genesets_result,
    example_pathfindR_output, example_pathfindR_output_clustered,
    example_comparison_output and example_mmu_output
  - Updated the example_active_snws data
  - updated the manifest data frame pathfindR.data_updates

                 Changes in version 2.0.0 (2023-04-27)                  

Major changes

  - Renamed example input/output data for better organization and easier
    access

                 Changes in version 1.1.3 (2022-12-11)                  

Major changes

  - Updated (hsa) KEGG pathways gene set objects kegg_genes and
    kegg_descriptions
  - Updated mmu KEGG pathways gene set objects mmu_kegg_genes and
    mmu_kegg_descriptions
  - Updated Reactome gene set objects reactome_genes and
    reactome_descriptions
  - Updated BioCarta gene set objects biocarta_genes and
    biocarta_descriptions
  - Updated GO gene set objects go_all_genes and GO_all_terms_df
  - Updated the BioGRID PIN adjacency list biogrid_adj_list
  - Updated the KEGG adjacency list kegg_adj_list
  - Updated the IntAct PIN adjacency list intact_adj_list
  - Updated the example data: RA_output, RA_clustered,
    RA_comparison_output and myeloma_output

                 Changes in version 1.1.2 (2021-08-20)                  

Major changes

  - Updated (hsa) KEGG pathways gene set objects kegg_genes and
    kegg_descriptions
  - Updated mmu KEGG pathways gene set objects mmu_kegg_genes and
    mmu_kegg_descriptions
  - Updated Reactome gene set objects reactome_genes and
    reactome_descriptions
  - Updated BioCarta gene set objects biocarta_genes and
    biocarta_descriptions
  - Updated GO gene set objects go_all_genes and GO_all_terms_df
  - Updated example data RA_output, RA_clustered, RA_comparison_output
    and myeloma_output
  - Updated the BioGRID PIN adjacency list biogrid_adj_list
  - Updated the STRING PIN adjacency list string_adj_list
  - Updated the mmu STRING PIN adjacency list mmu_string_adj_list
  - Updated the GeneMania PIN adjacency list genemania_adj_list
  - Updated the KEGG adjacency list kegg_adj_list
  - Updated the IntAct PIN adjacency list intact_adj_list
  - Updated example custom enrichment results data frame custom_results

Minor changes and bug fixes

  - Updated kegg_genes and kegg_descriptions so that there are no
    duplicated term descriptions
  - Updated mmu_kegg_genes and mmu_kegg_descriptions so that there are
    no duplicated term descriptions

                 Changes in version 1.1.1 (2020-11-20)                  

Major changes

  - Added the data frame of data pathfindR.data_updates, containing all
    the data for pathfindR along with descriptions and last update dates
  - Updated example data RA_output, RA_clustered, RA_comparison_output
    and myeloma_output after addition of the 'support' column

Minor changes and bug fixes

  - Updated BioGRID PIN so that it does not contain self-interactions

                 Changes in version 1.1.0 (2020-09-21)                  

Major changes

  - Updated (hsa) KEGG pathways gene set objects kegg_genes and
    kegg_descriptions
  - Updated mmu KEGG pathways gene set objects mmu_kegg_genes and
    mmu_kegg_descriptions
  - Updated Reactome gene set objects reactome_genes and
    reactome_descriptions
  - Updated BioCarta gene set objects biocarta_genes and
    biocarta_descriptions
  - Updated GO gene set objects go_all_genes and GO_all_terms_df
  - Updated Human Cell Markers gene set objects cell_markers_gsets and
    cell_markers_descriptions
  - Updated the BioGRID PIN adjacency list biogrid_adj_list
  - Updated the IntAct PIN adjacency list intact_adj_list
  - Updated the KEGG adjacency list kegg_adj_list
  - Updated example data RA_output, RA_clustered, RA_comparison_output
    and myeloma_output

                 Changes in version 1.0.0 (2020-06-04)                  

Major changes

  - Moved all data and related documentation from the main package
    pathfindR to this package