Package: pathfindR.data 2.1.0.9000
pathfindR.data: Data Package for 'pathfindR'
This is a data-only package, containing data needed to run the CRAN package 'pathfindR', a package for enrichment analysis utilizing active subnetworks. This package contains protein-protein interaction network data, data related to gene sets and example input/output data.
Authors:
pathfindR.data_2.1.0.9000.tar.gz
pathfindR.data_2.1.0.9000.zip(r-4.5)pathfindR.data_2.1.0.9000.zip(r-4.4)pathfindR.data_2.1.0.9000.zip(r-4.3)
pathfindR.data_2.1.0.9000.tgz(r-4.4-any)pathfindR.data_2.1.0.9000.tgz(r-4.3-any)
pathfindR.data_2.1.0.9000.tar.gz(r-4.5-noble)pathfindR.data_2.1.0.9000.tar.gz(r-4.4-noble)
pathfindR.data_2.1.0.9000.tgz(r-4.4-emscripten)pathfindR.data_2.1.0.9000.tgz(r-4.3-emscripten)
pathfindR.data.pdf |pathfindR.data.html✨
pathfindR.data/json (API)
NEWS
| # Install 'pathfindR.data' in R: |
| install.packages('pathfindR.data', repos = c('https://egeulgen.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/egeulgen/pathfindr.data/issues
- biocarta_descriptions - BioCarta Pathways - Descriptions
- biocarta_genes - BioCarta Pathways - Gene Sets
- cell_markers_descriptions - Human Cell Markers - Descriptions
- cell_markers_gsets - Human Cell Markers - Gene Sets
- example_active_snws - Example Active Subnetworks
- example_comparison_output - Second Example Output for the pathfindR Enrichment Workflow
- example_custom_genesets_result - Custom Gene Set Enrichment Results
- example_experiment_matrix - Example Experiment Matrix for pathfindR - Enriched Term Scoring
- example_mmu_input - Example Input for Mus musculus - Myeloma Analysis
- example_mmu_output - Example Output for Mus musculus - Myeloma Analysis
- example_pathfindR_input - Example Input for the pathfindR Enrichment Workflow - Rheumatoid Arthritis
- example_pathfindR_output - Example Output for the pathfindR Enrichment Workflow - Rheumatoid Arthritis
- example_pathfindR_output_clustered - Example Output for the pathfindR Clustering Workflow - Rheumatoid Arthritis
- go_all_genes - Gene Ontology - All Gene Ontology Gene Sets
- kegg_descriptions - KEGG Pathways - Descriptions
- kegg_genes - KEGG Pathways - Gene Sets
- mmu_kegg_descriptions - Mus Musculus KEGG Pathways - Descriptions
- mmu_kegg_genes - Mus Musculus KEGG Pathways - Gene Sets
- pathfindR.data_updates - Table of Data for pathfindR
- reactome_descriptions - Reactome Pathways - Descriptions
- reactome_genes - Reactome Pathways - Gene Sets
Last updated 6 months agofrom:78f4a51da3. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 24 2024 |
| R-4.5-win | OK | Oct 24 2024 |
| R-4.5-linux | OK | Oct 24 2024 |
| R-4.4-win | NOTE | Oct 24 2024 |
| R-4.4-mac | NOTE | Oct 24 2024 |
| R-4.3-win | NOTE | Oct 24 2024 |
| R-4.3-mac | NOTE | Oct 24 2024 |
Exports:
Dependencies:
