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  1. driveR::example_cohort_features_table
    Example Cohort-level Features Table for Driver Prioritization
    csv| xlsx| json| ndjson| rda| rds
    data.frame|362 x 27
  2. driveR::example_cohort_scna_table
    Example Cohort-level Somatic Copy Number Alteration Table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|126147 x 5
  3. driveR::example_features_table
    Example Features Table for Driver Prioritization
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4908 x 27
  4. driveR::example_gene_scna_table
    Example Gene-level Somatic Copy Number Alteration Table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46270 x 2
  5. driveR::example_scna_table
    Example Somatic Copy Number Alteration Table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3160 x 4
  6. driveR::KEGG_cancer_pathways_descriptions
    KEGG 'Pathways in cancer'-related Pathways - Descriptions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 2
  7. driveR::MTL_submodel_descriptions
    MTL Sub-model Descriptions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 2
  8. driveR::specific_thresholds
    Tumor type specific probability thresholds
    json| rda| rds
    numeric
  9. PANACEA::DGIdb_interactions_df
    DGIdb Interactions Expert-curated Sources
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11323 x 2
  10. PANACEA::example_driveR_res
    Example driveR Result
    csv| xlsx| json| ndjson| rda| rds
    data.frame|106 x 3
  11. PANACEA::example_scores_dist
    Example PANACEA "distance-based" Method Result
    json| rda| rds
    numeric
  12. PANACEA::example_scores_RWR
    Example PANACEA "RWR" Method Result
    json| rda| rds
    numeric
  13. PANACEA::STRING_adj_df
    Adjacency List for STRING v11.5 - High Confidence Interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|249816 x 3
  14. PANACEA::toy_W_mat
    Toy Adjacency Matrix (for examples)
    csv| json| rda| rds
    matrix|84 x 84
  15. pathfindR::example_unfiltered_snws
    Example Unfiltered Active Subnetworks
    csv| json| rda| rds
    list
  16. pathfindR.data::biocarta_descriptions
    BioCarta Pathways - Descriptions
    json| rda| rds
    character
  17. pathfindR.data::biocarta_genes
    BioCarta Pathways - Gene Sets
    json| rda| rds
    list
  18. pathfindR.data::cell_markers_descriptions
    Human Cell Markers - Descriptions
    json| rda| rds
    character
  19. pathfindR.data::cell_markers_gsets
    Human Cell Markers - Gene Sets
    json| rda| rds
    list
  20. pathfindR.data::example_active_snws
    Example Active Subnetworks
    csv| json| rda| rds
    list
  21. pathfindR.data::example_comparison_output
    Second Example Output for the pathfindR Enrichment Workflow (H.sapiens. - Rheumatoid Arthritis data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43 x 9
  22. pathfindR.data::example_custom_genesets_result
    Custom Gene Set Enrichment Results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 9
  23. pathfindR.data::example_experiment_matrix
    Example Experiment Matrix for pathfindR - Enriched Term Scoring
    csv| json| rda| rds
    matrix|572 x 33
  24. pathfindR.data::example_mmu_input
    Example Input for Mus musculus - Myeloma Analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45 x 2
  25. pathfindR.data::example_mmu_output
    Example Output for Mus musculus - Myeloma Analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 9
  26. pathfindR.data::example_pathfindR_input
    Example Input for the pathfindR Enrichment Workflow - Rheumatoid Arthritis (H.sapiens)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|572 x 3
  27. pathfindR.data::example_pathfindR_output
    Example Output for the pathfindR Enrichment Workflow - Rheumatoid Arthritis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|138 x 9
  28. pathfindR.data::example_pathfindR_output_clustered
    Example Output for the pathfindR Clustering Workflow - Rheumatoid Arthritis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|138 x 11
  29. pathfindR.data::go_all_genes
    Gene Ontology - All Gene Ontology Gene Sets
    json| rda| rds
    list
  30. pathfindR.data::kegg_descriptions
    KEGG Pathways - Descriptions
    json| rda| rds
    character
  31. pathfindR.data::kegg_genes
    KEGG Pathways - Gene Sets
    json| rda| rds
    list
  32. pathfindR.data::mmu_kegg_descriptions
    Mus Musculus KEGG Pathways - Descriptions
    json| rda| rds
    character
  33. pathfindR.data::mmu_kegg_genes
    Mus Musculus KEGG Pathways - Gene Sets
    json| rda| rds
    list
  34. pathfindR.data::pathfindR.data_updates
    Table of Data for pathfindR
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29 x 6
  35. pathfindR.data::reactome_descriptions
    Reactome Pathways - Descriptions
    json| rda| rds
    character
  36. pathfindR.data::reactome_genes
    Reactome Pathways - Gene Sets
    json| rda| rds
    list